Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide assembly protein lapbD0N37_RS09120Not AvailablePositive1941435 - 194257143337.4
orotidine-5'-phosphate decarboxylaseD0N37_RS09125Not AvailablePositive1942600 - 194331025423.0
hypothetical proteinD0N37_RS09130Not AvailableNegative1943386 - 194370612454.3
contractile injection system protein, vgrg/pvc8 familyD0N37_RS09145Not AvailableNegative1944500 - 194533931390.3
type vi secretion system lipoprotein tssjD0N37_RS09150Not AvailablePositive1945945 - 194637616386.4
type vi secretion system baseplate subunit tsskD0N37_RS09155Not AvailablePositive1946376 - 194771649799.6
type ivb secretion system protein icmh/dotuD0N37_RS09160Not AvailablePositive1947733 - 194845526971.8
type vi secretion system membrane subunit tssmD0N37_RS09165Not AvailablePositive1948460 - 1952170139895.0
type vi secretion system-associated protein tagfD0N37_RS09170Not AvailablePositive1952178 - 195317037278.6
type vi secretion system impa family n-terminal domain-containing proteinD0N37_RS24695Not AvailablePositive1953167 - 195401831835.7

Displaying genes 1951 – 1960 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.