Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase, hydrophobic membrane anchor proteinD0N37_RS08760Not AvailablePositive1852712 - 185305912730.0
integrase core domain-containing proteinD0N37_RS08765Not AvailablePositive1853060 - 185483163947.3
succinate dehydrogenase iron-sulfur subunitD0N37_RS08770Not AvailablePositive1854842 - 185556126630.2
2-oxoglutarate dehydrogenase e1 componentD0N37_RS08775Not AvailablePositive1855646 - 1858459105289.0
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseD0N37_RS08780Not AvailablePositive1858470 - 185996353247.7
adp-forming succinate--coa ligase subunit betaD0N37_RS08785Not AvailablePositive1860137 - 186130341314.5
succinate--coa ligase subunit alphaD0N37_RS08790Not AvailablePositive1861303 - 186217529852.1
crp/fnr family transcriptional regulatorD0N37_RS08795Not AvailablePositive1862245 - 186282922306.2
antibiotic biosynthesis monooxygenase family proteinD0N37_RS08800Not AvailableNegative1862969 - 186328912274.2
m24 family metallopeptidaseD0N37_RS08805Not AvailableNegative1863399 - 186461044306.7

Displaying genes 1881 – 1890 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.