Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductaseD0N37_RS04895Not AvailablePositive1043172 - 104457851064.4
nad(p)/fad-dependent oxidoreductaseD0N37_RS04900Not AvailablePositive1044565 - 104577044085.8
s66 peptidase family proteinD0N37_RS04905Not AvailablePositive1045842 - 104687638254.7
tonb family proteinD0N37_RS04910Not AvailablePositive1047388 - 10475827136.93
atp-dependent rna helicase srmbD0N37_RS04915Not AvailableNegative1047820 - 104904645890.1
trna1(val) (adenine(37)-n6)-methyltransferaseD0N37_RS04920Not AvailablePositive1049114 - 104981826494.5
response regulatorD0N37_RS04925Not AvailablePositive1049948 - 105154659295.7
flavodoxin fldbD0N37_RS04930Not AvailableNegative1051596 - 105212020006.1
site-specific tyrosine recombinase xerdD0N37_RS04935Not AvailablePositive1052201 - 105312434751.2
bifunctional protein-disulfide isomerase/oxidoreductase dsbcD0N37_RS04940Not AvailablePositive1053223 - 105396026219.4

Displaying genes 1101 – 1110 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.