Dickeya dianthicola strain ME23

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya dianthicola strain ME23 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain exhibits facultative aerobe/anaerobe oxygen requirements, allowing it to thrive in both aerobic and anaerobic environments. It is classified as mesophilic, with an optimal growth temperature of 37°C, which aligns with the temperature range preferred by many pathogenic bacteria. The genomic information for strain ME23 is documented under accession number NZ_CP031560.1, indicating the presence of a single replicon in its genetic makeup. This simplicity in genomic structure can have implications for its replication and adaptation capabilities in various environments. From a biological perspective, the traits of Dickeya dianthicola strain ME23 suggest that it may play a role in plant pathology, particularly in the context of mesophilic conditions often found in agricultural settings. The bacterium's ability to thrive in diverse oxygen conditions may enhance its survival in various soil types and plant tissues, potentially contributing to its pathogenicity. Understanding these traits can help in developing strategies for managing the diseases caused by this bacterium in crops, particularly those susceptible to Dickeya spp. through enhanced awareness of its growth conditions and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya dianthicola
Strainstrain ME23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Dickeya dianthicola strain ME23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya dianthicola strain ME23 chromosome, complete genome.

Gene Summary

Adenine Count

1085047 bp

Thymine Count

1088772 bp

Guanine Count

1363170 bp

Cytosine Count

1372069 bp

Genome Length

4909058 bp

Protein-coding Genes

4177 genes

Non-Coding Genes

302 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease vii large subunitDZA65_RS16615Not AvailablePositive3586659 - 358804452727.4
m4 family metallopeptidaseDZA65_RS16620Not AvailablePositive3588136 - 358918539164.9
protealysin inhibitor emfourinDZA65_RS16625Not AvailablePositive3589166 - 358953413717.2
ribosome biogenesis gtpase derDZA65_RS16630Not AvailableNegative3589633 - 359112054813.9
outer membrane protein assembly factor bambDZA65_RS16635Not AvailableNegative3591261 - 359244242400.2
yfgm family proteinDZA65_RS16640Not AvailableNegative3592453 - 359307322216.5
histidine--trna ligaseDZA65_RS16645Not AvailableNegative3593087 - 359436147093.4
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseDZA65_RS16650Not AvailableNegative3594496 - 359561740731.3
cytoskeleton protein rodzDZA65_RS16655Not AvailableNegative3595654 - 359664935255.8
type iv pilus biogenesis/stability protein pilwDZA65_RS16660Not AvailableNegative3596639 - 359740628205.7

Displaying genes 3281 – 3290 of 4479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.