Dickeya dianthicola strain ME23

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya dianthicola strain ME23 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain exhibits facultative aerobe/anaerobe oxygen requirements, allowing it to thrive in both aerobic and anaerobic environments. It is classified as mesophilic, with an optimal growth temperature of 37°C, which aligns with the temperature range preferred by many pathogenic bacteria. The genomic information for strain ME23 is documented under accession number NZ_CP031560.1, indicating the presence of a single replicon in its genetic makeup. This simplicity in genomic structure can have implications for its replication and adaptation capabilities in various environments. From a biological perspective, the traits of Dickeya dianthicola strain ME23 suggest that it may play a role in plant pathology, particularly in the context of mesophilic conditions often found in agricultural settings. The bacterium's ability to thrive in diverse oxygen conditions may enhance its survival in various soil types and plant tissues, potentially contributing to its pathogenicity. Understanding these traits can help in developing strategies for managing the diseases caused by this bacterium in crops, particularly those susceptible to Dickeya spp. through enhanced awareness of its growth conditions and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya dianthicola
Strainstrain ME23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Dickeya dianthicola strain ME23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya dianthicola strain ME23 chromosome, complete genome.

Gene Summary

Adenine Count

1085047 bp

Thymine Count

1088772 bp

Guanine Count

1363170 bp

Cytosine Count

1372069 bp

Genome Length

4909058 bp

Protein-coding Genes

4177 genes

Non-Coding Genes

302 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)DZA65_RS03860Not AvailablePositive818030 - 81996170149.4
inositol 2-dehydrogenaseDZA65_RS03865Not AvailablePositive820490 - 82147636113.1
substrate-binding domain-containing proteinDZA65_RS03870Not AvailablePositive821562 - 82250033164.8
sugar abc transporter atp-binding proteinDZA65_RS03875Not AvailablePositive822557 - 82410456770.6
abc transporter permeaseDZA65_RS03880Not AvailablePositive824121 - 82515536627.8
gfo/idh/moca family proteinDZA65_RS03885Not AvailablePositive825173 - 82630641090.2
bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2- deoxyphosphogluconate aldolaseDZA65_RS03890Not AvailablePositive826379 - 82832270967.1
myo-inosose-2 dehydrataseDZA65_RS03895Not AvailablePositive828349 - 82923932632.7
5-deoxy-glucuronate isomeraseDZA65_RS03900Not AvailablePositive829263 - 83009030924.4
lytic murein transglycosylase bDZA65_RS03910Not AvailableNegative830456 - 83155940507.1

Displaying genes 1021 – 1030 of 4479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.