Pseudomonas fluorescens strain SIK_W1

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain SIK_W1 is a Gram-negative, rod-shaped bacterium known for its heterotrophic lifestyle, utilizing organic compounds as its energy source. This strain is characterized by its aerobic nature, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. The cell arrangement is primarily in singles, indicating that these bacteria do not typically form clusters or chains. P. fluorescens strain SIK_W1 thrives optimally at a temperature of 25°C, positioning it within the mesophilic temperature range, which is conducive to growth in diverse environments. This strain has a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. In terms of ecological impact, Pseudomonas fluorescens strains, including SIK_W1, are often found in a variety of habitats, contributing to nutrient cycling and soil health. Their free-living nature allows them to play significant roles in biodegradation and bioremediation processes. Overall, the adaptability and ecological roles of Pseudomonas fluorescens suggest its importance in various biotic relationships and environmental interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain SIK_W1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain SIK_W1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas fluorescens strain SIK_W1 chromosome, complete genome.

Gene Summary

Adenine Count

1296839 bp

Thymine Count

1305899 bp

Guanine Count

2093865 bp

Cytosine Count

2094484 bp

Genome Length

6791087 bp

Protein-coding Genes

5964 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate carbamoyltransferase catalytic subunitDXV65_RS29115Not AvailablePositive6385935 - 638693936324.3
dihydroorotaseDXV65_RS29120Not AvailablePositive6386936 - 638820743984.9
nine proteinDXV65_RS29125Not AvailableNegative6388352 - 638876215519.0
c40 family peptidaseDXV65_RS29130Not AvailablePositive6389031 - 638966923557.5
type iv pilus twitching motility protein piltDXV65_RS29135Not AvailableNegative6389978 - 639101237476.6
yggs family pyridoxal phosphate-dependent enzymeDXV65_RS29140Not AvailablePositive6391070 - 639175624377.1
pyrroline-5-carboxylate reductaseDXV65_RS29145Not AvailablePositive6391790 - 639260828143.7
yggt family proteinDXV65_RS29150Not AvailablePositive6392633 - 639322021909.2
homoserine o-succinyltransferase metxDXV65_RS29160Not AvailablePositive6393409 - 639454841536.2
methionine biosynthesis protein metwDXV65_RS29165Not AvailablePositive6394556 - 639517623437.0

Displaying genes 5701 – 5710 of 6074 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.