Pseudomonas fluorescens strain SIK_W1

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain SIK_W1 is a Gram-negative, rod-shaped bacterium known for its heterotrophic lifestyle, utilizing organic compounds as its energy source. This strain is characterized by its aerobic nature, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. The cell arrangement is primarily in singles, indicating that these bacteria do not typically form clusters or chains. P. fluorescens strain SIK_W1 thrives optimally at a temperature of 25°C, positioning it within the mesophilic temperature range, which is conducive to growth in diverse environments. This strain has a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. In terms of ecological impact, Pseudomonas fluorescens strains, including SIK_W1, are often found in a variety of habitats, contributing to nutrient cycling and soil health. Their free-living nature allows them to play significant roles in biodegradation and bioremediation processes. Overall, the adaptability and ecological roles of Pseudomonas fluorescens suggest its importance in various biotic relationships and environmental interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain SIK_W1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain SIK_W1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas fluorescens strain SIK_W1 chromosome, complete genome.

Gene Summary

Adenine Count

1296839 bp

Thymine Count

1305899 bp

Guanine Count

2093865 bp

Cytosine Count

2094484 bp

Genome Length

6791087 bp

Protein-coding Genes

5964 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyprenyl synthetase family proteinDXV65_RS25980Not AvailablePositive5720774 - 572174234891.0
zinc ribbon domain-containing protein yjdmDXV65_RS25985Not AvailablePositive5721912 - 572225312198.6
hypothetical proteinDXV65_RS25990Not AvailablePositive5722413 - 57226709695.56
fkbp-type peptidyl-prolyl cis-trans isomeraseDXV65_RS25995Not AvailableNegative5722791 - 572340821747.6
methyl-accepting chemotaxis proteinDXV65_RS26000Not AvailablePositive5723686 - 572560568612.2
glyoxalase superfamily proteinDXV65_RS26005Not AvailableNegative5725839 - 572620713726.2
n-acyl-d-amino-acid deacylase family proteinDXV65_RS26010Not AvailableNegative5726237 - 572770052633.6
murr/rpir family transcriptional regulatorDXV65_RS26015Not AvailableNegative5727702 - 572856231018.5
gluconate:h+ symporterDXV65_RS26020Not AvailableNegative5728575 - 572992447374.8
lysozyme inhibitor lpri family proteinDXV65_RS26025Not AvailablePositive5730173 - 573055313271.8

Displaying genes 5091 – 5100 of 6074 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.