Pseudomonas fluorescens strain SIK_W1

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain SIK_W1 is a Gram-negative, rod-shaped bacterium known for its heterotrophic lifestyle, utilizing organic compounds as its energy source. This strain is characterized by its aerobic nature, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. The cell arrangement is primarily in singles, indicating that these bacteria do not typically form clusters or chains. P. fluorescens strain SIK_W1 thrives optimally at a temperature of 25°C, positioning it within the mesophilic temperature range, which is conducive to growth in diverse environments. This strain has a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. In terms of ecological impact, Pseudomonas fluorescens strains, including SIK_W1, are often found in a variety of habitats, contributing to nutrient cycling and soil health. Their free-living nature allows them to play significant roles in biodegradation and bioremediation processes. Overall, the adaptability and ecological roles of Pseudomonas fluorescens suggest its importance in various biotic relationships and environmental interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain SIK_W1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain SIK_W1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas fluorescens strain SIK_W1 chromosome, complete genome.

Gene Summary

Adenine Count

1296839 bp

Thymine Count

1305899 bp

Guanine Count

2093865 bp

Cytosine Count

2094484 bp

Genome Length

6791087 bp

Protein-coding Genes

5964 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminodeoxychorismate synthase component iDXV65_RS23250Not AvailablePositive5165999 - 516734248971.2
type ii toxin-antitoxin system higb family toxinDXV65_RS23255Not AvailablePositive5167551 - 516785311430.0
type ii toxin-antitoxin system higa family antitoxinDXV65_RS23260Not AvailablePositive5167853 - 516820913230.2
bifunctional phosphoserine phosphatase/homoserine phosphotransferase thrhDXV65_RS23265Not AvailableNegative5168284 - 516890123733.7
phosphoadenylyl-sulfate reductaseDXV65_RS23270Not AvailablePositive5169055 - 516978927889.1
ncs1 family nucleobase:cation symporter-1DXV65_RS23275Not AvailablePositive5170206 - 517173255095.2
aspartate/glutamate racemase family proteinDXV65_RS23280Not AvailablePositive5171747 - 517247525897.2
is110 family transposaseDXV65_RS23285Not AvailablePositive5172718 - 517364134169.5
lysr family transcriptional regulatorDXV65_RS23290Not AvailableNegative5173964 - 517488733360.4
3-oxoacyl-acp reductase family proteinDXV65_RS23295Not AvailablePositive5174994 - 517574025280.1

Displaying genes 4561 – 4570 of 6074 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.