Pseudomonas fluorescens strain SIK_W1

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain SIK_W1 is a Gram-negative, rod-shaped bacterium known for its heterotrophic lifestyle, utilizing organic compounds as its energy source. This strain is characterized by its aerobic nature, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. The cell arrangement is primarily in singles, indicating that these bacteria do not typically form clusters or chains. P. fluorescens strain SIK_W1 thrives optimally at a temperature of 25°C, positioning it within the mesophilic temperature range, which is conducive to growth in diverse environments. This strain has a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. In terms of ecological impact, Pseudomonas fluorescens strains, including SIK_W1, are often found in a variety of habitats, contributing to nutrient cycling and soil health. Their free-living nature allows them to play significant roles in biodegradation and bioremediation processes. Overall, the adaptability and ecological roles of Pseudomonas fluorescens suggest its importance in various biotic relationships and environmental interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain SIK_W1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain SIK_W1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas fluorescens strain SIK_W1 chromosome, complete genome.

Gene Summary

Adenine Count

1296839 bp

Thymine Count

1305899 bp

Guanine Count

2093865 bp

Cytosine Count

2094484 bp

Genome Length

6791087 bp

Protein-coding Genes

5964 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tssgDXV65_RS17270Not AvailableNegative3875254 - 387626137746.7
type vi secretion system baseplate subunit tssfDXV65_RS17275Not AvailableNegative3876225 - 387801267392.4
type vi secretion system baseplate subunit tsseDXV65_RS17280Not AvailableNegative3878002 - 387840314556.8
type vi secretion system contractile sheath large subunitDXV65_RS17285Not AvailableNegative3878418 - 387989355451.7
type vi secretion system contractile sheath small subunitDXV65_RS17290Not AvailableNegative3879922 - 388041918084.0
type vi secretion system protein tssaDXV65_RS17295Not AvailableNegative3880452 - 388200559345.2
hcp family type vi secretion system effectorDXV65_RS17300Not AvailablePositive3882484 - 388299919052.3
aldo/keto reductaseDXV65_RS17305Not AvailableNegative3883052 - 388387330133.2
duf1543 domain-containing proteinDXV65_RS17310Not AvailablePositive3883980 - 388447418478.1
polyamine abc transporter substrate-binding proteinDXV65_RS17315Not AvailablePositive3884579 - 388567940054.0

Displaying genes 3401 – 3410 of 6074 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.