Natronorubrum bangense strain JCM 10635

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natronorubrum

Description

Natronorubrum bangense strain JCM 10635 is characterized by having three replicons, indicating a complex genomic structure. Its genetic information is documented in multiple accessions, specifically NZ_CP031306.1, NZ_CP031308.1, and AOHY00000000.1. The presence of three replicons can suggest a significant level of genetic adaptability, which may play a role in the organism's survival in extreme environments, such as high-salinity and alkaline conditions where Natronorubrum species are often found. This trait is indicative of a potential for diverse metabolic pathways and resilience to environmental stresses. The specific ecological niche inhabited by Natronorubrum bangense strain JCM 10635 may involve interactions with other microbial communities, contributing to biogeochemical cycles, particularly in alkaline saline environments. These ecosystems are often rich in unique microorganisms that have specialized adaptations, and the presence of this strain could add to the overall microbial diversity and functionality in such habitats. Understanding the genomic structure and traits of Natronorubrum bangense strain JCM 10635 is essential for further research into its ecological role and potential applications in biotechnology, particularly in processes that exploit extremophiles for industrial purposes.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatronorubrum
SpeciesNatronorubrum bangense
Strainstrain JCM 10635

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natronorubrum bangense JCM 10635 contig_62, whole genome shotgun

Gene Summary

Adenine Count

814148 bp

Thymine Count

814217 bp

Guanine Count

1241852 bp

Cytosine Count

1240898 bp

Genome Length

4111275 bp

Protein-coding Genes

3956 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsr/smtb family transcription factorDV706_RS18675Not AvailablePositive685184 - 68556113834.2
molybdopterin-dependent oxidoreductaseDV706_RS18680Not AvailablePositive685961 - 688780105069.0
4fe-4s dicluster domain-containing proteinDV706_RS18685Not AvailablePositive688777 - 68964032177.7
nrfd/psrc family molybdoenzyme membrane anchor subunitDV706_RS18690Not AvailablePositive689637 - 69099849268.6
hypothetical proteinDV706_RS18695Not AvailablePositive690995 - 6911896821.93
molecular chaperoneDV706_RS18700Not AvailablePositive691359 - 69196122398.9
hydrogenase iron-sulfur subunitDV706_RS18705Not AvailablePositive691954 - 69405973903.1
upf0058 family proteinDV706_RS18710Not AvailablePositive694145 - 69517636594.5
arsenite efflux transporter metallochaperone arsdDV706_RS18715Not AvailablePositive695772 - 69609811873.5
arsenical pump-driving atpaseDV706_RS18720Not AvailablePositive696111 - 69801870437.0

Displaying genes 4711 – 4720 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003721N-(6-aminohexanoyl)-6-aminohexanoateC12H24N2O3Chemical structure of N-(6-aminohexanoyl)-6-aminohexanoateNot available
Average244.335Da
Monoisotopic244.1786926Da
BASm00045794-O-beta-D-mannopyranosyl-D-glucopyranoseC12H22O11Chemical structure of 4-O-beta-D-mannopyranosyl-D-glucopyranoseNot available
Average342.297Da
Monoisotopic342.116211528Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.