Paracoccus yeei strain CCUG 32053

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei strain CCUG 32053 is a Gram-negative, non-motile cocci bacterium classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. This strain is an aerobic organism, requiring oxygen for its metabolic processes. It thrives in mesophilic conditions, which suggests that it prefers moderate temperatures typically found in soil environments. The genomic structure of Paracoccus yeei strain CCUG 32053 is characterized by the presence of six replicons, which may play a role in the organism's genetic diversity and adaptability. The strain does not produce spores, indicating a reliance on other survival strategies in its soil habitat. Given its ecological niche, Paracoccus yeei strain CCUG 32053 likely contributes to soil nutrient cycling and organic matter decomposition. As a chemoheterotroph, it aids in breaking down complex organic materials, thus facilitating the availability of nutrients for other organisms within the soil ecosystem. The presence of this bacterium highlights the importance of microbial communities in maintaining soil health and supporting various ecological functions. Accessions associated with this strain include NZ_CP031079.1, NZ_CP031082.1, NZ_CP031083.1, NZ_CP031085.1, NZ_CP031086.1, and NZ_CP031078.1, which provide genetic information for further study and understanding of its role in the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
Strainstrain CCUG 32053

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei strain CCUG 32053
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

555292 bp

Thymine Count

554124 bp

Guanine Count

1156723 bp

Cytosine Count

1155540 bp

Genome Length

3421679 bp

Protein-coding Genes

3284 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr substrate-binding domain-containing proteinPY32053_RS17650Not AvailablePositive149050 - 14998834473.2
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudPY32053_RS17655Not AvailableNegative149985 - 15071025425.3
5-dehydro-4-deoxy-d-glucuronate isomerasePY32053_RS17660Not AvailableNegative150707 - 15153130214.2
cupin domain-containing proteinPY32053_RS17665Not AvailableNegative151543 - 15182410232.0
trap transporter large permeasePY32053_RS17670Not AvailableNegative151821 - 15310145136.1
trap transporter small permeasePY32053_RS17675Not AvailableNegative153105 - 15364119631.4
trap transporter substrate-binding proteinPY32053_RS17680Not AvailableNegative153706 - 15468335602.3
glucuronate isomerasePY32053_RS17685Not AvailableNegative154711 - 15611152657.1
gntr family transcriptional regulatorPY32053_RS17690Not AvailablePositive156198 - 15689325966.1
bifunctional dna-binding transcriptional regulator/o6-methylguanine-dna methyltransferase adaPY32053_RS17695Not AvailablePositive156978 - 15802437017.4

Displaying genes 3581 – 3590 of 4138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.