Paracoccus yeei strain CCUG 32053

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei strain CCUG 32053 is a Gram-negative, non-motile cocci bacterium classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. This strain is an aerobic organism, requiring oxygen for its metabolic processes. It thrives in mesophilic conditions, which suggests that it prefers moderate temperatures typically found in soil environments. The genomic structure of Paracoccus yeei strain CCUG 32053 is characterized by the presence of six replicons, which may play a role in the organism's genetic diversity and adaptability. The strain does not produce spores, indicating a reliance on other survival strategies in its soil habitat. Given its ecological niche, Paracoccus yeei strain CCUG 32053 likely contributes to soil nutrient cycling and organic matter decomposition. As a chemoheterotroph, it aids in breaking down complex organic materials, thus facilitating the availability of nutrients for other organisms within the soil ecosystem. The presence of this bacterium highlights the importance of microbial communities in maintaining soil health and supporting various ecological functions. Accessions associated with this strain include NZ_CP031079.1, NZ_CP031082.1, NZ_CP031083.1, NZ_CP031085.1, NZ_CP031086.1, and NZ_CP031078.1, which provide genetic information for further study and understanding of its role in the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
Strainstrain CCUG 32053

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei strain CCUG 32053
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

555292 bp

Thymine Count

554124 bp

Guanine Count

1156723 bp

Cytosine Count

1155540 bp

Genome Length

3421679 bp

Protein-coding Genes

3284 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphate-dependent aminotransferasePY32053_RS04970Not AvailableNegative997591 - 99881743814.7
rida family proteinPY32053_RS04975Not AvailableNegative998843 - 99926514272.2
pyridoxal phosphate-dependent aminotransferasePY32053_RS04980Not AvailableNegative999262 - 100047943800.1
lysr family transcriptional regulatorPY32053_RS04985Not AvailablePositive1000581 - 100146831730.7
dihydrodipicolinate synthase family proteinPY32053_RS04990Not AvailableNegative1001472 - 100239832933.9
d-amino-acid transaminasePY32053_RS04995Not AvailableNegative1002410 - 100326730905.2
lamb/ycsf family proteinPY32053_RS05000Not AvailableNegative1003279 - 100404927426.0
trap transporter substrate-binding proteinPY32053_RS05005Not AvailablePositive1004222 - 100520835247.2
trap transporter small permease subunitPY32053_RS05010Not AvailablePositive1005285 - 100582718720.4
trap transporter large permeasePY32053_RS05015Not AvailablePositive1005840 - 100714146008.8

Displaying genes 1101 – 1110 of 4138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.