Pandoraea sp. XY-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. XY-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a relatively simple genomic architecture compared to more complex bacteria that may have multiple replicons. The genomic data for Pandoraea sp. XY-2 is cataloged under the accession number NZ_CP030849.1, which serves as a reference for further studies and comparisons within the genus. The genus Pandoraea is known for its association with various ecological niches, including environments that may be rich in organic material or contaminated by hydrocarbons. Gram-negative bacteria, such as Pandoraea sp. XY-2, are often significant in biogeochemical processes due to their diverse metabolic capabilities. While specific ecological roles for Pandoraea sp. XY-2 are not detailed in the provided information, the traits of Gram-negative bacteria often suggest potential involvement in nutrient cycling and organic matter degradation. This bacterium's simple genomic structure and rod shape may contribute to its adaptability in various environments, potentially allowing it to thrive in conditions that challenge other microbial forms. Understanding such traits can provide insights into its ecological roles and interactions within its habitat, highlighting the importance of studying bacteria like Pandoraea sp. XY-2 to uncover their contributions to environmental processes and microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. XY-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. XY-2 chromosome, complete genome.

Gene Summary

Adenine Count

912940 bp

Thymine Count

919286 bp

Guanine Count

1607764 bp

Cytosine Count

1616216 bp

Genome Length

5056206 bp

Protein-coding Genes

4584 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorDRB87_RS21805Not AvailablePositive4797513 - 479844533913.1
cytochrome c oxidase subunit iv family proteinDRB87_RS21810Not AvailableNegative4798473 - 479883813360.6
heme-copper oxidase subunit iii family proteinDRB87_RS21815Not AvailableNegative4798847 - 479953925589.3
cytochrome oxidase subunit iiiDRB87_RS21820Not AvailableNegative4799675 - 480019618978.4
cytochrome c oxidase subunit iDRB87_RS21825Not AvailableNegative4800193 - 480203167820.9
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeDRB87_RS21830Not AvailableNegative4802837 - 480395840781.4
acyltransferase family proteinDRB87_RS21835Not AvailablePositive4804453 - 480640271704.5
polysaccharide biosynthesis proteinDRB87_RS21840Not AvailableNegative4806496 - 480842771323.4
degt/dnrj/eryc1/strs family aminotransferaseDRB87_RS21845Not AvailableNegative4808430 - 480960843595.7
acetyltransferaseDRB87_RS21850Not AvailableNegative4809613 - 481024221271.8

Displaying genes 4441 – 4450 of 4665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.