Pandoraea sp. XY-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. XY-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a relatively simple genomic architecture compared to more complex bacteria that may have multiple replicons. The genomic data for Pandoraea sp. XY-2 is cataloged under the accession number NZ_CP030849.1, which serves as a reference for further studies and comparisons within the genus. The genus Pandoraea is known for its association with various ecological niches, including environments that may be rich in organic material or contaminated by hydrocarbons. Gram-negative bacteria, such as Pandoraea sp. XY-2, are often significant in biogeochemical processes due to their diverse metabolic capabilities. While specific ecological roles for Pandoraea sp. XY-2 are not detailed in the provided information, the traits of Gram-negative bacteria often suggest potential involvement in nutrient cycling and organic matter degradation. This bacterium's simple genomic structure and rod shape may contribute to its adaptability in various environments, potentially allowing it to thrive in conditions that challenge other microbial forms. Understanding such traits can provide insights into its ecological roles and interactions within its habitat, highlighting the importance of studying bacteria like Pandoraea sp. XY-2 to uncover their contributions to environmental processes and microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. XY-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. XY-2 chromosome, complete genome.

Gene Summary

Adenine Count

912940 bp

Thymine Count

919286 bp

Guanine Count

1607764 bp

Cytosine Count

1616216 bp

Genome Length

5056206 bp

Protein-coding Genes

4584 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv pilus secretin pilqDRB87_RS21105Not AvailableNegative4656719 - 465932893002.5
piln domain-containing proteinDRB87_RS21110Not AvailableNegative4659318 - 465997724500.9
pilus assembly protein pilmDRB87_RS21115Not AvailableNegative4659980 - 466102937209.1
penicillin-binding protein 1aDRB87_RS21120Not AvailablePositive4661274 - 466371589214.8
iron donor protein cyayDRB87_RS21125Not AvailableNegative4663810 - 466413011760.5
lps translocon maturation chaperone lptmDRB87_RS21130Not AvailablePositive4664188 - 46644157445.27
diaminopimelate decarboxylaseDRB87_RS21135Not AvailablePositive4664504 - 466577245326.8
protein-methionine-sulfoxide reductase heme-binding subunit msrqDRB87_RS21140Not AvailableNegative4665700 - 466645228307.9
protein-methionine-sulfoxide reductase catalytic subunit msrpDRB87_RS21145Not AvailableNegative4666480 - 466747837169.6
c-type cytochrome biogenesis protein ccsbDRB87_RS21150Not AvailableNegative4667683 - 466886744377.3

Displaying genes 4301 – 4310 of 4665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.