Pandoraea sp. XY-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. XY-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a relatively simple genomic architecture compared to more complex bacteria that may have multiple replicons. The genomic data for Pandoraea sp. XY-2 is cataloged under the accession number NZ_CP030849.1, which serves as a reference for further studies and comparisons within the genus. The genus Pandoraea is known for its association with various ecological niches, including environments that may be rich in organic material or contaminated by hydrocarbons. Gram-negative bacteria, such as Pandoraea sp. XY-2, are often significant in biogeochemical processes due to their diverse metabolic capabilities. While specific ecological roles for Pandoraea sp. XY-2 are not detailed in the provided information, the traits of Gram-negative bacteria often suggest potential involvement in nutrient cycling and organic matter degradation. This bacterium's simple genomic structure and rod shape may contribute to its adaptability in various environments, potentially allowing it to thrive in conditions that challenge other microbial forms. Understanding such traits can provide insights into its ecological roles and interactions within its habitat, highlighting the importance of studying bacteria like Pandoraea sp. XY-2 to uncover their contributions to environmental processes and microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. XY-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. XY-2 chromosome, complete genome.

Gene Summary

Adenine Count

912940 bp

Thymine Count

919286 bp

Guanine Count

1607764 bp

Cytosine Count

1616216 bp

Genome Length

5056206 bp

Protein-coding Genes

4584 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseDRB87_RS20755Not AvailableNegative4587419 - 458829431108.7
type ii 3-dehydroquinate dehydrataseDRB87_RS20760Not AvailableNegative4588297 - 458875816902.0
bifunctional sugar phosphate isomerase/epimerase/4-hydroxyphenylpyruvate dioxygenase family proteinDRB87_RS20765Not AvailablePositive4589079 - 459096868947.6
porinDRB87_RS20770Not AvailablePositive4591043 - 459222140657.5
sigma-54 interaction domain-containing proteinDRB87_RS20775Not AvailableNegative4592331 - 459383054091.9
gntp family permeaseDRB87_RS20780Not AvailablePositive4594166 - 459556648887.8
3-hydroxybutyrate dehydrogenaseDRB87_RS20785Not AvailablePositive4595579 - 459635526727.0
cupin domain-containing proteinDRB87_RS20790Not AvailablePositive4596483 - 459689915218.0
methyl-accepting chemotaxis proteinDRB87_RS20795Not AvailableNegative4596909 - 459806940348.0
phosphoribosyltransferaseDRB87_RS20800Not AvailablePositive4598958 - 459963224209.1

Displaying genes 4231 – 4240 of 4665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.