Pandoraea sp. XY-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. XY-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a relatively simple genomic architecture compared to more complex bacteria that may have multiple replicons. The genomic data for Pandoraea sp. XY-2 is cataloged under the accession number NZ_CP030849.1, which serves as a reference for further studies and comparisons within the genus. The genus Pandoraea is known for its association with various ecological niches, including environments that may be rich in organic material or contaminated by hydrocarbons. Gram-negative bacteria, such as Pandoraea sp. XY-2, are often significant in biogeochemical processes due to their diverse metabolic capabilities. While specific ecological roles for Pandoraea sp. XY-2 are not detailed in the provided information, the traits of Gram-negative bacteria often suggest potential involvement in nutrient cycling and organic matter degradation. This bacterium's simple genomic structure and rod shape may contribute to its adaptability in various environments, potentially allowing it to thrive in conditions that challenge other microbial forms. Understanding such traits can provide insights into its ecological roles and interactions within its habitat, highlighting the importance of studying bacteria like Pandoraea sp. XY-2 to uncover their contributions to environmental processes and microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. XY-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. XY-2 chromosome, complete genome.

Gene Summary

Adenine Count

912940 bp

Thymine Count

919286 bp

Guanine Count

1607764 bp

Cytosine Count

1616216 bp

Genome Length

5056206 bp

Protein-coding Genes

4584 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeDRB87_RS20600Not AvailableNegative4558724 - 45589627930.51
glsb/yeaq/ymge family stress response membrane proteinDRB87_RS20605Not AvailableNegative4558984 - 45592388624.08
glutamyl-trna reductaseDRB87_RS20610Not AvailablePositive4559551 - 456083146472.1
peptide chain release factor 1DRB87_RS20615Not AvailablePositive4560832 - 456191440341.6
peptide chain release factor n(5)-glutamine methyltransferaseDRB87_RS20620Not AvailablePositive4561914 - 456277130342.3
grx4 family monothiol glutaredoxinDRB87_RS20625Not AvailablePositive4562852 - 456316611669.2
ubix family flavin prenyltransferaseDRB87_RS20630Not AvailablePositive4563184 - 456379821665.4
hypothetical proteinDRB87_RS20635Not AvailablePositive4563887 - 456418011079.4
methyl-accepting chemotaxis proteinDRB87_RS20640Not AvailablePositive4565082 - 456677961387.0
cher family methyltransferaseDRB87_RS23845Not AvailablePositive4566887 - 456821849183.3

Displaying genes 4201 – 4210 of 4665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.