Pandoraea sp. XY-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. XY-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a relatively simple genomic architecture compared to more complex bacteria that may have multiple replicons. The genomic data for Pandoraea sp. XY-2 is cataloged under the accession number NZ_CP030849.1, which serves as a reference for further studies and comparisons within the genus. The genus Pandoraea is known for its association with various ecological niches, including environments that may be rich in organic material or contaminated by hydrocarbons. Gram-negative bacteria, such as Pandoraea sp. XY-2, are often significant in biogeochemical processes due to their diverse metabolic capabilities. While specific ecological roles for Pandoraea sp. XY-2 are not detailed in the provided information, the traits of Gram-negative bacteria often suggest potential involvement in nutrient cycling and organic matter degradation. This bacterium's simple genomic structure and rod shape may contribute to its adaptability in various environments, potentially allowing it to thrive in conditions that challenge other microbial forms. Understanding such traits can provide insights into its ecological roles and interactions within its habitat, highlighting the importance of studying bacteria like Pandoraea sp. XY-2 to uncover their contributions to environmental processes and microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. XY-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. XY-2 chromosome, complete genome.

Gene Summary

Adenine Count

912940 bp

Thymine Count

919286 bp

Guanine Count

1607764 bp

Cytosine Count

1616216 bp

Genome Length

5056206 bp

Protein-coding Genes

4584 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorDRB87_RS12045Not AvailableNegative2650079 - 265096932204.9
nad-dependent epimerase/dehydratase family proteinDRB87_RS12050Not AvailablePositive2651066 - 265208237111.8
3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing proteinDRB87_RS12055Not AvailableNegative2652207 - 265313332770.3
hypothetical proteinDRB87_RS23050Not AvailableNegative2653209 - 26533886301.77
frg domain-containing proteinDRB87_RS12060Not AvailablePositive2653387 - 265413628797.5
diguanylate cyclaseDRB87_RS12065Not AvailableNegative2654165 - 265556551115.4
hypothetical proteinDRB87_RS12070Not AvailableNegative2655688 - 26559369384.33
4-hydroxy-tetrahydrodipicolinate synthaseDRB87_RS12075Not AvailablePositive2656559 - 265751233170.2
methyl-accepting chemotaxis proteinDRB87_RS12080Not AvailableNegative2657551 - 265921258363.7
glutathione s-transferaseDRB87_RS12085Not AvailableNegative2659442 - 266011325157.4

Displaying genes 2461 – 2470 of 4665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.