Massilia sp. YMA4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Massilia

Description

Massilia sp. YMA4 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This classification places it within a broader group of bacteria known for their diverse metabolic capabilities and ecological roles. The strain is cataloged under the accession number NZ_CP030092.1, which provides a reference for genomic data related to this organism. The Gram-negative nature of Massilia sp. YMA4 suggests that it has a thinner peptidoglycan layer and an outer membrane, which can contribute to its adaptability in various environments. This structural feature is significant as it often influences the organism's interactions with its surroundings, including its susceptibility to antibiotics and its ability to thrive in different ecological niches. The rod shape of Massilia sp. YMA4 may also play a role in its motility and colonization strategies, potentially allowing it to occupy specific habitats effectively. Rod-shaped bacteria are commonly associated with diverse environments, including soil, water, and human-associated microbiomes, which could indicate the ecological versatility of this strain. Overall, Massilia sp. YMA4 exemplifies the diversity within the Massilia genus, which is known for its ecological significance, including potential roles in biodegradation and nutrient cycling. Understanding the traits of Massilia sp. YMA4 contributes to our knowledge of microbial ecology and the functional roles that such bacteria play in their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia sp. YMA4
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Massilia sp. YMA4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Massilia sp. YMA4 chromosome, complete genome.

Gene Summary

Adenine Count

1071224 bp

Thymine Count

1068726 bp

Guanine Count

2090094 bp

Cytosine Count

2098737 bp

Genome Length

6328781 bp

Protein-coding Genes

5413 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf817 domain-containing proteinDPH57_RS07370Not AvailablePositive1721487 - 172232631474.9
nuclear transport factor 2 family proteinDPH57_RS07375Not AvailableNegative1722336 - 172282718152.7
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidaseDPH57_RS07380Not AvailableNegative1722981 - 172500871750.6
hypothetical proteinDPH57_RS07385Not AvailablePositive1725083 - 172537610116.7
peptide chain release factor 2DPH57_RS07390Not AvailablePositive1725422 - 172652641376.6
had family hydrolaseDPH57_RS07395Not AvailablePositive1726526 - 172722125142.7
lysine--trna ligaseDPH57_RS07400Not AvailablePositive1727228 - 172875757304.5
hypothetical proteinDPH57_RS07405Not AvailableNegative1728836 - 17291149674.69
slatt domain-containing proteinDPH57_RS07410Not AvailableNegative1729149 - 172966418552.5
nucleotide 5'-monophosphate nucleosidase ppnnDPH57_RS07415Not AvailableNegative1729672 - 173104550693.4

Displaying genes 1511 – 1520 of 5521 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.