Massilia sp. YMA4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Massilia

Description

Massilia sp. YMA4 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This classification places it within a broader group of bacteria known for their diverse metabolic capabilities and ecological roles. The strain is cataloged under the accession number NZ_CP030092.1, which provides a reference for genomic data related to this organism. The Gram-negative nature of Massilia sp. YMA4 suggests that it has a thinner peptidoglycan layer and an outer membrane, which can contribute to its adaptability in various environments. This structural feature is significant as it often influences the organism's interactions with its surroundings, including its susceptibility to antibiotics and its ability to thrive in different ecological niches. The rod shape of Massilia sp. YMA4 may also play a role in its motility and colonization strategies, potentially allowing it to occupy specific habitats effectively. Rod-shaped bacteria are commonly associated with diverse environments, including soil, water, and human-associated microbiomes, which could indicate the ecological versatility of this strain. Overall, Massilia sp. YMA4 exemplifies the diversity within the Massilia genus, which is known for its ecological significance, including potential roles in biodegradation and nutrient cycling. Understanding the traits of Massilia sp. YMA4 contributes to our knowledge of microbial ecology and the functional roles that such bacteria play in their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia sp. YMA4
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Massilia sp. YMA4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Massilia sp. YMA4 chromosome, complete genome.

Gene Summary

Adenine Count

1071224 bp

Thymine Count

1068726 bp

Guanine Count

2090094 bp

Cytosine Count

2098737 bp

Genome Length

6328781 bp

Protein-coding Genes

5413 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rid family detoxifying hydrolaseDPH57_RS04870Not AvailablePositive1106493 - 110692115206.2
threonine synthaseDPH57_RS04875Not AvailablePositive1106996 - 110819842385.4
hypothetical proteinDPH57_RS27220Not AvailableNegative1108667 - 110908915486.6
rhs repeat domain-containing proteinDPH57_RS04880Not AvailableNegative1109086 - 110988929454.5
hypothetical proteinDPH57_RS27225Not AvailableNegative1109893 - 111039018090.8
rhs repeat-associated core domain-containing proteinDPH57_RS04885Not AvailableNegative1110392 - 111195457588.8
alpha/beta hydrolase family proteinDPH57_RS28390Not AvailableNegative1111955 - 11120021978.31
hypothetical proteinDPH57_RS27230Not AvailableNegative1112064 - 111253416805.9
duf6861 domain-containing proteinDPH57_RS04890Not AvailableNegative1112534 - 1116979163540.0
type vi secretion system vgr family proteinDPH57_RS04895Not AvailablePositive1117176 - 111970191782.9

Displaying genes 991 – 1000 of 5521 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.