Polynucleobacter paneuropaeus strain UB-Kaiv-W7

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Polynucleobacter

Description

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 is characterized as a rod-shaped bacterium. This strain is notable for its single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accession NZ_CP030088.1, which provides a reference for researchers seeking to study its genomic features in detail. The rod shape of Polynucleobacter paneuropaeus is characteristic of many members of the family Planctomycetaceae, to which it belongs, and may play a role in its ecological niche. Understanding the traits of Polynucleobacter paneuropaeus strain UB-Kaiv-W7 can provide insights into its ecological roles, particularly in freshwater systems where members of this genus are often found. Their shape and genetic organization may facilitate interactions with other microorganisms and contribute to biogeochemical cycling in aquatic environments. This strain exemplifies the diversity and specialization within the Polynucleobacter genus, highlighting the importance of studying specific strains to unravel their unique contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter paneuropaeus
Strainstrain UB-Kaiv-W7

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 chromosome.

Gene Summary

Adenine Count

497329 bp

Thymine Count

497297 bp

Guanine Count

415808 bp

Cytosine Count

419174 bp

Genome Length

1830921 bp

Protein-coding Genes

1851 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hit family proteinDPM18_RS02770Not AvailablePositive505078 - 50551816644.1
duf1841 family proteinDPM18_RS02775Not AvailableNegative505520 - 50594516255.5
endonuclease iiiDPM18_RS02780Not AvailableNegative505938 - 50659424528.9
fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmcDPM18_RS02785Not AvailableNegative506594 - 50728324967.7
polyhydroxyalkanoate depolymeraseDPM18_RS02790Not AvailableNegative507321 - 50861948554.1
amino acid aminotransferaseDPM18_RS02795Not AvailableNegative508663 - 50986544036.8
excinuclease abc subunit uvrbDPM18_RS02800Not AvailablePositive510004 - 51216081531.8
fe-s cluster assembly transcription factorDPM18_RS02805Not AvailablePositive512289 - 51286120767.1
iscs subfamily cysteine desulfuraseDPM18_RS02810Not AvailablePositive512894 - 51415346651.2
fe-s cluster assembly scaffold iscuDPM18_RS02815Not AvailablePositive514183 - 51456913734.4

Displaying genes 571 – 580 of 1907 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.