Polynucleobacter paneuropaeus strain UB-Kaiv-W7

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Polynucleobacter

Description

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 is characterized as a rod-shaped bacterium. This strain is notable for its single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accession NZ_CP030088.1, which provides a reference for researchers seeking to study its genomic features in detail. The rod shape of Polynucleobacter paneuropaeus is characteristic of many members of the family Planctomycetaceae, to which it belongs, and may play a role in its ecological niche. Understanding the traits of Polynucleobacter paneuropaeus strain UB-Kaiv-W7 can provide insights into its ecological roles, particularly in freshwater systems where members of this genus are often found. Their shape and genetic organization may facilitate interactions with other microorganisms and contribute to biogeochemical cycling in aquatic environments. This strain exemplifies the diversity and specialization within the Polynucleobacter genus, highlighting the importance of studying specific strains to unravel their unique contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter paneuropaeus
Strainstrain UB-Kaiv-W7

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 chromosome.

Gene Summary

Adenine Count

497329 bp

Thymine Count

497297 bp

Guanine Count

415808 bp

Cytosine Count

419174 bp

Genome Length

1830921 bp

Protein-coding Genes

1851 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseDPM18_RS00930Not AvailablePositive157897 - 15942355295.9
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseDPM18_RS00935Not AvailablePositive159426 - 16085650096.9
phospho-n-acetylmuramoyl-pentapeptide- transferaseDPM18_RS00940Not AvailablePositive160847 - 16201643140.2
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseDPM18_RS00945Not AvailablePositive162066 - 16364056612.3
putative lipid ii flippase ftswDPM18_RS00950Not AvailablePositive163637 - 16490846385.0
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseDPM18_RS00955Not AvailablePositive164929 - 16597837045.2
udp-n-acetylmuramate--l-alanine ligaseDPM18_RS00960Not AvailablePositive165975 - 16741150907.3
d-alanine--d-alanine ligaseDPM18_RS00965Not AvailablePositive167404 - 16839935338.8
cell division protein ftsq/divibDPM18_RS00970Not AvailablePositive168396 - 16925332861.4
cell division protein ftsaDPM18_RS00975Not AvailablePositive169275 - 17050443932.4

Displaying genes 201 – 210 of 1907 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.