Polynucleobacter paneuropaeus strain UB-Kaiv-W7

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Polynucleobacter

Description

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 is characterized as a rod-shaped bacterium. This strain is notable for its single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accession NZ_CP030088.1, which provides a reference for researchers seeking to study its genomic features in detail. The rod shape of Polynucleobacter paneuropaeus is characteristic of many members of the family Planctomycetaceae, to which it belongs, and may play a role in its ecological niche. Understanding the traits of Polynucleobacter paneuropaeus strain UB-Kaiv-W7 can provide insights into its ecological roles, particularly in freshwater systems where members of this genus are often found. Their shape and genetic organization may facilitate interactions with other microorganisms and contribute to biogeochemical cycling in aquatic environments. This strain exemplifies the diversity and specialization within the Polynucleobacter genus, highlighting the importance of studying specific strains to unravel their unique contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter paneuropaeus
Strainstrain UB-Kaiv-W7

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polynucleobacter paneuropaeus strain UB-Kaiv-W7 chromosome.

Gene Summary

Adenine Count

497329 bp

Thymine Count

497297 bp

Guanine Count

415808 bp

Cytosine Count

419174 bp

Genome Length

1830921 bp

Protein-coding Genes

1851 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseDPM18_RS08540Not AvailableNegative1661658 - 166249431149.6
outer membrane lipoprotein lolbDPM18_RS08545Not AvailablePositive1662530 - 166401453701.9
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseDPM18_RS08550Not AvailablePositive1664007 - 166489132049.7
Trna-glnNot AvailableNot AvailablePositive1664896 - 1664972Not Available
ribose-phosphate pyrophosphokinaseDPM18_RS08560Not AvailablePositive1665040 - 166599634121.7
50s ribosomal protein l25/general stress protein ctcDPM18_RS08565Not AvailablePositive1666134 - 166679923746.6
aminoacyl-trna hydrolaseDPM18_RS08570Not AvailablePositive1666886 - 166747621682.0
yfhl family 4fe-4s dicluster ferredoxinDPM18_RS08575Not AvailableNegative1667473 - 16677369792.83
pantetheine-phosphate adenylyltransferaseDPM18_RS08580Not AvailableNegative1667755 - 166824618511.3
16s rrna (guanine(966)-n(2))-methyltransferase rsmdDPM18_RS08585Not AvailableNegative1668282 - 166888722177.6

Displaying genes 1711 – 1720 of 1907 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.