Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cyclobacteriaceae
Genus
Echinicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cyclobacteriaceae |
| Genus | Echinicola |
| Species | Echinicola strongylocentroti |
| Strain | strain MEBiC08714 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1744517 bp
Thymine Count
1747944 bp
Guanine Count
1384406 bp
Cytosine Count
1375277 bp
Genome Length
6252144 bp
Protein-coding Genes
4741 genes
Non-Coding Genes
79 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DN752_RS14025 | Not Available | Positive | 3591927 - 3593441 | 55952.4 |
| glycoside hydrolase family protein | DN752_RS14030 | Not Available | Positive | 3593770 - 3594843 | 41356.4 |
| duf4450 domain-containing protein | DN752_RS14035 | Not Available | Positive | 3594850 - 3598491 | 135699.0 |
| plp-dependent aminotransferase family protein | DN752_RS14040 | Not Available | Negative | 3599065 - 3600489 | 53674.0 |
| branched-chain amino acid aminotransferase | DN752_RS14045 | Not Available | Positive | 3600702 - 3601769 | 40088.9 |
| rna polymerase sigma factor | DN752_RS14050 | Not Available | Positive | 3601923 - 3602462 | 20864.9 |
| hypothetical protein | DN752_RS14055 | Not Available | Positive | 3602443 - 3602712 | 10708.0 |
| clpp family protease | DN752_RS14060 | Not Available | Positive | 3602716 - 3603375 | 23995.8 |
| hypothetical protein | DN752_RS14065 | Not Available | Positive | 3603933 - 3605765 | 70369.1 |
| rhamnogalacturonan acetylesterase | DN752_RS14070 | Not Available | Negative | 3605827 - 3607329 | 55950.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
