Escherichia coli strain 2016C-3878

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 2016C-3878 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as a facultative anaerobe, allowing it to thrive in various oxygen conditions. This strain is mesophilic, with an optimal growth temperature of 37 degrees Celsius. The habitat of strain 2016C-3878 is primarily host-associated, where it can be found in association with a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and other animals such as Canis lupus familiaris (domestic dogs) and Felis catus (domestic cats). Additionally, it can associate with various plant species like Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli), reflecting its potential versatility in ecological niches. This strain is implicated in numerous health effects, particularly in humans, where it is associated with urinary tract infections (UTIs), gastrointestinal infections, and severe complications like hemolytic uremic syndrome (HUS) and neonatal meningitis. The extensive list of health impacts suggests that E. coli strain 2016C-3878 plays a significant role in both infectious diseases and foodborne illnesses. The strain possesses two replicons and is characterized by a biotic relationship as a free-living organism, indicating its adaptability in various environments. The presence of this strain across multiple species emphasizes its ecological versatility and potential implications for public health, particularly in relation to zoonotic transmission and food safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 2016C-3878

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 2016C-3878
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 2016C-3878


Gene Summary

Adenine Count

1237340 bp

Thymine Count

1237176 bp

Guanine Count

1258646 bp

Cytosine Count

1262294 bp

Genome Length

4995456 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

250 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive966528 - 966574Not Available
IntegraseBEN53_RS04910Not AvailableNegative966588 - 96775145039.5
ExcisionaseBEN53_RS27550Not AvailableNegative967914 - 9679782593.11
Hypothetical proteinBEN53_RS04920Not AvailableNegative967950 - 96822810925.2
Hypothetical proteinBEN53_RS04925Not AvailableNegative968276 - 9684948230.79
Hypothetical proteinBEN53_RS04930Not AvailableNegative968593 - 9688088095.86
Dna n-6-adenine-methyltransferaseBEN53_RS04935Not AvailableNegative968885 - 96944220575.4
Hypothetical proteinBEN53_RS04940Not AvailableNegative969439 - 9695975873.19
ExonucleaseBEN53_RS04945Not AvailableNegative969594 - 97027425930.9
Recombination protein betBEN53_RS04950Not AvailableNegative970271 - 97105629701.2

Displaying genes 1 – 10 of 5123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 74 in total