Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pig-l deacetylase family protein | BEN53_RS03970 | Not Available | Negative | 785308 - 785979 | 25023.2 |
| taurine abc transporter substrate-binding protein | BEN53_RS03975 | Not Available | Positive | 786595 - 787557 | 34215.8 |
| taurine abc transporter atp-binding subunit | BEN53_RS03980 | Not Available | Positive | 787570 - 788337 | 28262.4 |
| taurine abc transporter permease tauc | BEN53_RS03985 | Not Available | Positive | 788334 - 789161 | 29562.5 |
| taurine dioxygenase | BEN53_RS03990 | Not Available | Positive | 789158 - 790009 | 32381.2 |
| porphobilinogen synthase | BEN53_RS03995 | Not Available | Negative | 790049 - 791023 | 35626.8 |
| autotransporter outer membrane beta-barrel domain-containing protein | BEN53_RS04000 | Not Available | Positive | 791549 - 794500 | 105798.0 |
| hydrogen peroxide resistance inhibitor ipra | BEN53_RS04005 | Not Available | Positive | 794586 - 795209 | 23930.0 |
| d-alanyl-d-alanine- carboxypeptidase/endopeptidase amph | BEN53_RS04010 | Not Available | Negative | 795210 - 796367 | 41851.5 |
| peptide antibiotic transporter sbma | BEN53_RS04020 | Not Available | Positive | 796719 - 797939 | 46447.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




