Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylisocitrate lyase | BEN53_RS03820 | Not Available | Positive | 752463 - 753353 | 32135.5 |
| 2-methylcitrate synthase | BEN53_RS03825 | Not Available | Positive | 753513 - 754682 | 43105.6 |
| 2-methylcitrate dehydratase | BEN53_RS03830 | Not Available | Positive | 754716 - 756167 | 53968.7 |
| propionate--coa ligase | BEN53_RS03835 | Not Available | Positive | 756207 - 758093 | 69495.0 |
| cytosine permease | BEN53_RS03840 | Not Available | Positive | 758330 - 759589 | 43652.3 |
| cytosine/isoguanine deaminase | BEN53_RS03845 | Not Available | Positive | 759579 - 760862 | 47623.9 |
| hypothetical protein | BEN53_RS27785 | Not Available | Positive | 760902 - 760993 | 2857.49 |
| transcriptional regulator cynr | BEN53_RS03850 | Not Available | Negative | 760995 - 761894 | 32824.6 |
| carbonic anhydrase cynt | BEN53_RS03855 | Not Available | Positive | 762004 - 762663 | 23717.6 |
| cyanase | BEN53_RS03860 | Not Available | Positive | 762694 - 763164 | 17033.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




