Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ykgj family cysteine cluster protein | BEN53_RS03550 | Not Available | Negative | 699084 - 699413 | 11799.1 |
| fimbrial chaperone ecpe | BEN53_RS03555 | Not Available | Negative | 699726 - 700436 | 26650.7 |
| fimbrial adhesin ecpd | BEN53_RS03560 | Not Available | Negative | 700405 - 702048 | 59937.1 |
| fimbrial usher ecpc | BEN53_RS03565 | Not Available | Negative | 702038 - 704563 | 91297.7 |
| fimbrial chaperone ecpb | BEN53_RS03570 | Not Available | Negative | 704589 - 705257 | 24484.3 |
| common pilus major fimbrillin subunit ecpa | BEN53_RS03575 | Not Available | Negative | 705315 - 705902 | 20082.4 |
| ecp biosynthesis operon dna-binding transcriptional regulator ecpr | BEN53_RS03580 | Not Available | Negative | 705977 - 706519 | 21231.8 |
| hypothetical protein | BEN53_RS03590 | Not Available | Positive | 707395 - 707569 | 6327.76 |
| type b 50s ribosomal protein l36 | BEN53_RS03595 | Not Available | Negative | 707604 - 707744 | 5466.94 |
| type b 50s ribosomal protein l31 | BEN53_RS03600 | Not Available | Negative | 707744 - 708007 | 9946.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




