Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan meso-diaminopimelic acid protein amidase | BEN53_RS03360 | Not Available | Negative | 666095 - 666835 | 28022.8 |
| hypothetical protein | BEN53_RS03365 | Not Available | Negative | 666991 - 667268 | 10982.7 |
| type ii toxin-antitoxin system antitoxin dinj | BEN53_RS03370 | Not Available | Negative | 667271 - 667531 | 9348.3 |
| c40 family peptidase | BEN53_RS03375 | Not Available | Positive | 667741 - 668490 | 28795.4 |
| rep-associated tyrosine transposase | BEN53_RS03380 | Not Available | Positive | 668666 - 669163 | 19980.9 |
| hypothetical protein | BEN53_RS03385 | Not Available | Negative | 669275 - 670987 | 62244.0 |
| putative lateral flagellar export/assembly protein lafu | BEN53_RS03390 | Not Available | Positive | 670959 - 671744 | 28929.9 |
| dna polymerase iv | BEN53_RS03395 | Not Available | Positive | 671815 - 672870 | 39487.2 |
| gnat family n-acetyltransferase | BEN53_RS03400 | Not Available | Positive | 672867 - 673319 | 17459.1 |
| rna ligase rtcb family protein | BEN53_RS03405 | Not Available | Positive | 673510 - 674649 | 41412.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




