Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ile | Not Available | Not Available | Positive | 648588 - 648664 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 648707 - 648782 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 648966 - 651869 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 651971 - 652086 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 652141 - 652217 | Not Available |
| 2,5-didehydrogluconate reductase dkgb | BEN53_RS03280 | Not Available | Positive | 652380 - 653183 | 29493.5 |
| dna-binding transcriptional regulator yafc | BEN53_RS03285 | Not Available | Negative | 653180 - 654094 | 33752.7 |
| endonuclease/exonuclease/phosphatase family protein | BEN53_RS03290 | Not Available | Positive | 654335 - 655135 | 29993.4 |
| class i sam-dependent methyltransferase | BEN53_RS03295 | Not Available | Positive | 655212 - 655982 | 28174.2 |
| murein transglycosylase d | BEN53_RS03300 | Not Available | Negative | 656030 - 657388 | 49420.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




