Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | BEN53_RS03105 | Not Available | Positive | 616774 - 617970 | 43424.6 |
| (2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase | BEN53_RS03110 | Not Available | Positive | 618159 - 618917 | 28314.5 |
| phosphatidate cytidylyltransferase | BEN53_RS03115 | Not Available | Positive | 618930 - 619787 | 31483.6 |
| sigma e protease regulator rsep | BEN53_RS03120 | Not Available | Positive | 619799 - 621151 | 49088.2 |
| outer membrane protein assembly factor bama | BEN53_RS03125 | Not Available | Positive | 621181 - 623613 | 90557.5 |
| molecular chaperone skp | BEN53_RS03130 | Not Available | Positive | 623735 - 624220 | 17634.2 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | BEN53_RS03135 | Not Available | Positive | 624224 - 625249 | 36026.7 |
| 3-hydroxyacyl-acp dehydratase fabz | BEN53_RS03140 | Not Available | Positive | 625354 - 625809 | 17034.0 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | BEN53_RS03145 | Not Available | Positive | 625813 - 626601 | 28081.7 |
| lipid-a-disaccharide synthase | BEN53_RS03150 | Not Available | Positive | 626601 - 627749 | 42357.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




