Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine endoprotease degp | BEN53_RS03050 | Not Available | Positive | 605155 - 606579 | 49357.3 |
| dna-binding transcriptional regulator cdar | BEN53_RS03055 | Not Available | Positive | 606734 - 607891 | 43660.1 |
| duf3461 family protein | BEN53_RS03060 | Not Available | Negative | 607945 - 608331 | 15097.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | BEN53_RS03065 | Not Available | Negative | 608641 - 609465 | 29892.8 |
| bifunctional uridylyltransferase/uridylyl-removing protein glnd | BEN53_RS03070 | Not Available | Negative | 609496 - 612168 | 102352.0 |
| type i methionyl aminopeptidase | BEN53_RS03075 | Not Available | Negative | 612230 - 613024 | 29332.5 |
| 30s ribosomal protein s2 | BEN53_RS03085 | Not Available | Positive | 613392 - 614117 | 26745.2 |
| translation elongation factor ts | BEN53_RS03090 | Not Available | Positive | 614252 - 615103 | 30424.7 |
| ump kinase | BEN53_RS03095 | Not Available | Positive | 615250 - 615975 | 25971.9 |
| ribosome recycling factor | BEN53_RS03100 | Not Available | Positive | 616125 - 616682 | 20639.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




