Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmp reductase | BEN53_RS02725 | Not Available | Positive | 536397 - 537440 | 37370.9 |
| protein transport protein hofc | BEN53_RS02730 | Not Available | Negative | 537475 - 538677 | 44327.1 |
| type ii secretion system protein gspe | BEN53_RS02735 | Not Available | Negative | 538667 - 540052 | 50641.4 |
| prepilin peptidase-dependent pilin | BEN53_RS02740 | Not Available | Negative | 540062 - 540502 | 15621.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | BEN53_RS02750 | Not Available | Negative | 540705 - 541598 | 32706.0 |
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | BEN53_RS02755 | Not Available | Positive | 541686 - 542237 | 20574.3 |
| beta-lactamase regulator ampe | BEN53_RS02760 | Not Available | Positive | 542234 - 543088 | 32081.8 |
| aromatic amino acid transporter arop | BEN53_RS02765 | Not Available | Negative | 543131 - 544504 | 49693.1 |
| pyruvate dehydrogenase complex transcriptional repressor pdhr | BEN53_RS02770 | Not Available | Positive | 545045 - 545809 | 29427.2 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | BEN53_RS02780 | Not Available | Positive | 545970 - 548633 | 99674.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




