Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transporter atp-binding protein thiq | BEN53_RS02530 | Not Available | Negative | 495512 - 496210 | 24922.5 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | BEN53_RS02535 | Not Available | Negative | 496194 - 497804 | 59445.6 |
| thiamine abc transporter substrate binding subunit | BEN53_RS02540 | Not Available | Negative | 497780 - 498763 | 36240.2 |
| t3ss effector espy2 | BEN53_RS02545 | Not Available | Positive | 499134 - 499703 | 21745.7 |
| dna-binding transcriptional regulator sgrr | BEN53_RS02550 | Not Available | Negative | 499933 - 501591 | 64200.0 |
| glucose uptake inhibitor sgrt | BEN53_RS02555 | Not Available | Positive | 501680 - 501811 | 5382.47 |
| 3-isopropylmalate dehydratase small subunit | BEN53_RS02560 | Not Available | Negative | 501919 - 502524 | 22630.8 |
| 3-isopropylmalate dehydratase large subunit | BEN53_RS02565 | Not Available | Negative | 502535 - 503935 | 49884.7 |
| 3-isopropylmalate dehydrogenase | BEN53_RS02570 | Not Available | Negative | 503938 - 505029 | 39530.3 |
| 2-isopropylmalate synthase | BEN53_RS02575 | Not Available | Negative | 505029 - 506600 | 57259.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




