Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | BEN53_RS02315 | Not Available | Positive | 448711 - 449532 | 28772.4 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | BEN53_RS02325 | Not Available | Positive | 449988 - 451136 | 41419.4 |
| carbamoyl-phosphate synthase large subunit | BEN53_RS02330 | Not Available | Positive | 451154 - 454375 | 117907.0 |
| carnitine metabolism transcriptional regulator caif | BEN53_RS02340 | Not Available | Positive | 454636 - 455031 | 15437.1 |
| carnitine operon protein caie | BEN53_RS02345 | Not Available | Negative | 455150 - 455740 | 21074.5 |
| crotonobetainyl-coa hydratase | BEN53_RS02350 | Not Available | Negative | 455746 - 456531 | 28154.7 |
| crotonobetaine/carnitine-coa ligase | BEN53_RS02355 | Not Available | Negative | 456640 - 458193 | 58501.3 |
| l-carnitine coa-transferase | BEN53_RS02360 | Not Available | Negative | 458267 - 459484 | 45087.3 |
| crotonobetainyl-coa dehydrogenase | BEN53_RS02365 | Not Available | Negative | 459613 - 460755 | 42560.8 |
| l-carnitine/gamma-butyrobetaine antiporter | BEN53_RS02370 | Not Available | Negative | 460786 - 462300 | 56608.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




