Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin family protein | BEN53_RS02015 | Not Available | Positive | 386404 - 387477 | 39850.1 |
| metal-dependent hydrolase | BEN53_RS02020 | Not Available | Positive | 387474 - 388253 | 28858.7 |
| yjjw family glycine radical enzyme activase | BEN53_RS02025 | Not Available | Negative | 388370 - 389233 | 31415.2 |
| yjji family glycine radical enzyme | BEN53_RS02030 | Not Available | Negative | 389205 - 390755 | 58075.4 |
| deoxyribose-phosphate aldolase | BEN53_RS02035 | Not Available | Positive | 391013 - 391792 | 27765.3 |
| thymidine phosphorylase | BEN53_RS02040 | Not Available | Positive | 391870 - 393192 | 47182.9 |
| phosphopentomutase | BEN53_RS02045 | Not Available | Positive | 393244 - 394467 | 44372.4 |
| purine-nucleoside phosphorylase | BEN53_RS02050 | Not Available | Positive | 394524 - 395243 | 25937.4 |
| helix-turn-helix domain-containing protein | BEN53_RS02055 | Not Available | Negative | 395404 - 395667 | 9901.29 |
| lipoate--protein ligase lpla | BEN53_RS02060 | Not Available | Negative | 395699 - 396715 | 37928.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




