Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type-f conjugative transfer system pilin assembly protein trbc | BEN53_RS26540 | Not Available | Negative | 201435 - 202073 | 23437.3 |
| conjugal transfer pilus assembly protein trau | BEN53_RS26545 | Not Available | Negative | 202082 - 203074 | 36770.5 |
| type-f conjugative transfer system protein traw | BEN53_RS26550 | Not Available | Negative | 203071 - 203703 | 23631.7 |
| type-f conjugative transfer system protein trbi | BEN53_RS26555 | Not Available | Negative | 203700 - 204086 | 14246.1 |
| type iv secretion system protein trac | BEN53_RS26560 | Not Available | Negative | 204083 - 206710 | 99165.3 |
| conjugal transfer protein trar | BEN53_RS26565 | Not Available | Negative | 206870 - 207091 | 8313.95 |
| type iv conjugative transfer system lipoprotein trav | BEN53_RS26570 | Not Available | Negative | 207226 - 207741 | 18497.2 |
| conjugal transfer protein trbg | BEN53_RS26575 | Not Available | Negative | 207738 - 207989 | 9126.86 |
| conjugal transfer protein trbd | BEN53_RS26580 | Not Available | Negative | 208001 - 208198 | 7025.55 |
| conjugal transfer pilus-stabilizing protein trap | BEN53_RS26585 | Not Available | Negative | 208185 - 208775 | 21944.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




