Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer pilus assembly protein trah | BEN53_RS26490 | Not Available | Negative | 195023 - 196396 | 50221.1 |
| f-type conjugal transfer protein trbf | BEN53_RS26495 | Not Available | Negative | 196396 - 196776 | 14450.5 |
| p-type conjugative transfer protein trbj | BEN53_RS26500 | Not Available | Negative | 196763 - 197104 | 12587.5 |
| type-f conjugative transfer system pilin assembly thiol-disulfide isomerase trbb | BEN53_RS26505 | Not Available | Negative | 197034 - 197579 | 19733.8 |
| type-f conjugative transfer system pilin chaperone traq | BEN53_RS26510 | Not Available | Negative | 197566 - 197850 | 10866.4 |
| hypothetical protein | BEN53_RS26515 | Not Available | Positive | 197931 - 198245 | 12115.1 |
| conjugal transfer protein trba | BEN53_RS26520 | Not Available | Negative | 198247 - 198594 | 12927.4 |
| type-f conjugative transfer system pilin assembly protein traf | BEN53_RS26525 | Not Available | Negative | 198610 - 199353 | 28008.6 |
| conjugal transfer protein trbe | BEN53_RS26530 | Not Available | Negative | 199346 - 199603 | 9779.94 |
| type-f conjugative transfer system mating-pair stabilization protein tran | BEN53_RS26535 | Not Available | Negative | 199630 - 201438 | 65691.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




