Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system antitoxin pemi | BEN53_RS27250 | Not Available | Negative | 174896 - 175153 | 9333.16 |
| cpbp family intramembrane glutamic endopeptidase | BEN53_RS26390 | Not Available | Negative | 175246 - 175899 | 24308.9 |
| hypothetical protein | BEN53_RS27380 | Not Available | Negative | 175997 - 176137 | 4944.99 |
| incfii family plasmid replication initiator repa | BEN53_RS26400 | Not Available | Negative | 176838 - 177695 | 32700.6 |
| hypothetical protein | BEN53_RS26405 | Not Available | Negative | 177688 - 178170 | 17792.5 |
| repa leader peptide tap | BEN53_RS27925 | Not Available | Negative | 178163 - 178237 | 2588.29 |
| replication regulatory protein repa | BEN53_RS26420 | Not Available | Negative | 178469 - 178726 | 9595.37 |
| hok/gef family protein | BEN53_RS26425 | Not Available | Negative | 179010 - 179159 | 5543.0 |
| wbuc family cupin fold metalloprotein | BEN53_RS27385 | Not Available | Negative | 179520 - 179594 | 2930.71 |
| anr family transcriptional regulator | BEN53_RS26435 | Not Available | Negative | 179840 - 180052 | 8272.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




