Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate/proton symporter btst | BEN53_RS01855 | Not Available | Negative | 357300 - 359450 | 77371.6 |
| amino acid deaminase | BEN53_RS01865 | Not Available | Negative | 359718 - 360938 | 44038.1 |
| n-acyl-d-amino-acid deacylase family protein | BEN53_RS01875 | Not Available | Positive | 361139 - 362581 | 52562.0 |
| rida family protein | BEN53_RS01880 | Not Available | Positive | 362591 - 362980 | 14070.8 |
| sodium:solute symporter family protein | BEN53_RS01885 | Not Available | Positive | 363083 - 364552 | 52571.8 |
| murr/rpir family transcriptional regulator | BEN53_RS01890 | Not Available | Negative | 364562 - 365425 | 31376.5 |
| methyl-accepting chemotaxis protein | BEN53_RS01895 | Not Available | Positive | 365607 - 367271 | 59822.9 |
| mfs transporter | BEN53_RS01900 | Not Available | Negative | 367320 - 368681 | 49402.4 |
| gntr family transcriptional regulator | BEN53_RS01905 | Not Available | Negative | 368896 - 369810 | 35390.2 |
| l-galactonate oxidoreductase | BEN53_RS01910 | Not Available | Positive | 369949 - 370971 | 36436.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




