Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid transfer protein htdo | BEN53_RS25550 | Not Available | Positive | 29186 - 29647 | 17207.4 |
| inchi-type conjugal transfer protein trhb | BEN53_RS25555 | Not Available | Positive | 29637 - 30992 | 48515.8 |
| hypothetical protein | BEN53_RS25560 | Not Available | Positive | 31000 - 31482 | 18772.5 |
| protein-disulfide isomerase htdt | BEN53_RS25565 | Not Available | Positive | 31601 - 32353 | 27859.8 |
| inchi-type conjugal transfer lipoprotein trhv | BEN53_RS25570 | Not Available | Positive | 32363 - 33313 | 33901.1 |
| trac family protein | BEN53_RS25575 | Not Available | Positive | 33322 - 36003 | 101519.0 |
| para family protein | BEN53_RS25580 | Not Available | Positive | 39840 - 41093 | 47036.0 |
| parb family protein | BEN53_RS25585 | Not Available | Positive | 41090 - 42094 | 38388.9 |
| hypothetical protein | BEN53_RS25590 | Not Available | Negative | 42156 - 42545 | 13996.0 |
| hypothetical protein | BEN53_RS25595 | Not Available | Negative | 42542 - 43063 | 19053.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




