Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | BEN53_RS25425 | Not Available | Negative | 10320 - 11204 | 31150.6 |
| cysteine hydrolase family protein | BEN53_RS25430 | Not Available | Negative | 11342 - 11734 | 14133.7 |
| wbuc family cupin fold metalloprotein | BEN53_RS25435 | Not Available | Positive | 11738 - 13318 | 59292.9 |
| is6-like element is26 family transposase | BEN53_RS25440 | Not Available | Negative | 13369 - 14073 | 27896.9 |
| wbuc family cupin fold metalloprotein | BEN53_RS25445 | Not Available | Positive | 14139 - 14423 | 10649.2 |
| class 1 integron integrase inti1 | BEN53_RS25455 | Not Available | Negative | 14871 - 15884 | 38383.4 |
| trimethoprim-resistant dihydrofolate reductase dfra14 | BEN53_RS25460 | Not Available | Positive | 16040 - 16513 | 17543.0 |
| is6-like element is26 family transposase | BEN53_RS25465 | Not Available | Positive | 16583 - 17287 | 27896.9 |
| wbuc family cupin fold metalloprotein | BEN53_RS25475 | Not Available | Positive | 17341 - 17655 | 12078.6 |
| tn3 family transposase | BEN53_RS25480 | Not Available | Positive | 17658 - 20624 | 111116.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




