Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| csbd family protein | BEN53_RS25190 | Not Available | Positive | 4962809 - 4963018 | 8349.69 |
| zinc uptake transcriptional repressor zur | BEN53_RS25195 | Not Available | Negative | 4963060 - 4963575 | 19261.2 |
| duf2713 family protein | BEN53_RS25200 | Not Available | Positive | 4963893 - 4964897 | 37977.3 |
| trna dihydrouridine(20/20a) synthase dusa | BEN53_RS25205 | Not Available | Positive | 4965259 - 4966296 | 38456.1 |
| envelope stress response protein pspg | BEN53_RS25210 | Not Available | Positive | 4966430 - 4966672 | 9009.97 |
| quinone oxidoreductase | BEN53_RS25215 | Not Available | Negative | 4966838 - 4967821 | 35174.1 |
| replicative dna helicase | BEN53_RS25220 | Not Available | Positive | 4967904 - 4969319 | 52393.1 |
| alanine racemase | BEN53_RS25225 | Not Available | Positive | 4969372 - 4970451 | 39155.2 |
| aromatic amino acid transaminase | BEN53_RS25230 | Not Available | Positive | 4970704 - 4971897 | 43609.2 |
| hypothetical protein | BEN53_RS27705 | Not Available | Negative | 4972401 - 4972623 | 8480.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




