Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside recognition domain-containing protein | BEN53_RS01740 | Not Available | Negative | 340691 - 341374 | 23794.8 |
| rna 2'-phosphotransferase | BEN53_RS01750 | Not Available | Positive | 341624 - 342178 | 20560.7 |
| mfs transporter | BEN53_RS01755 | Not Available | Negative | 342191 - 343369 | 41289.1 |
| sdia-regulated domain-containing protein | BEN53_RS01760 | Not Available | Negative | 343437 - 344297 | 31940.0 |
| duf3343 domain-containing protein | BEN53_RS01765 | Not Available | Negative | 344362 - 344619 | 9655.84 |
| putative 2-hydroxyacyl-coa dehydratase activator yjil | BEN53_RS01770 | Not Available | Negative | 344616 - 345383 | 27173.7 |
| double-cubane-cluster-containing anaerobic reductase | BEN53_RS01775 | Not Available | Negative | 345393 - 346544 | 42757.2 |
| duf445 domain-containing protein | BEN53_RS01780 | Not Available | Negative | 346660 - 347940 | 48191.6 |
| multidrug efflux mfs transporter mdtm | BEN53_RS01785 | Not Available | Negative | 347981 - 349213 | 44566.0 |
| rpn family recombination-promoting nuclease/putative transposase | BEN53_RS01800 | Not Available | Positive | 349680 - 350636 | 37205.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




