Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copg family transcriptional regulator | BEN53_RS24115 | Not Available | Positive | 4738313 - 4738531 | 8410.2 |
| copg family transcriptional regulator | BEN53_RS24120 | Not Available | Positive | 4738751 - 4738993 | 9291.08 |
| type ii toxin-antitoxin system vapc family toxin | BEN53_RS24125 | Not Available | Positive | 4738993 - 4739367 | 13961.0 |
| formate dehydrogenase accessory protein fdhe | BEN53_RS24130 | Not Available | Negative | 4739404 - 4740333 | 34720.6 |
| formate dehydrogenase cytochrome b556 subunit | BEN53_RS24135 | Not Available | Negative | 4740330 - 4740965 | 24607.7 |
| formate dehydrogenase o subunit beta | BEN53_RS24140 | Not Available | Negative | 4740962 - 4741864 | 33102.1 |
| formate dehydrogenase-n subunit alpha | BEN53_RS24145 | Not Available | Negative | 4741877 - 4744927 | 112389.0 |
| formate dehydrogenase accessory sulfurtransferase fdhd | BEN53_RS24155 | Not Available | Positive | 4745121 - 4745957 | 30697.0 |
| atp-binding protein | BEN53_RS24160 | Not Available | Positive | 4746267 - 4748102 | 68118.8 |
| hypothetical protein | BEN53_RS24165 | Not Available | Positive | 4748104 - 4750410 | 89936.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




