Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator | BEN53_RS23805 | Not Available | Negative | 4672417 - 4673184 | 28298.0 |
| dna recombination protein rmuc | BEN53_RS23810 | Not Available | Positive | 4673401 - 4674828 | 54753.6 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | BEN53_RS23815 | Not Available | Positive | 4674923 - 4675678 | 28074.8 |
| ubiquinone biosynthesis protein ubij | BEN53_RS23820 | Not Available | Positive | 4675692 - 4676297 | 22123.8 |
| ubiquinone biosynthesis regulatory protein kinase ubib | BEN53_RS23825 | Not Available | Positive | 4676294 - 4677934 | 63246.4 |
| sec-independent protein translocase subunit tata | BEN53_RS23830 | Not Available | Positive | 4678013 - 4678282 | 9664.5 |
| sec-independent protein translocase protein tatb | BEN53_RS23835 | Not Available | Positive | 4678286 - 4678801 | 18421.8 |
| sec-independent protein translocase subunit tatc | BEN53_RS23840 | Not Available | Positive | 4678804 - 4679580 | 28877.9 |
| 3'-5' ssdna/rna exonuclease tatd | BEN53_RS23845 | Not Available | Positive | 4679622 - 4680404 | 29070.7 |
| transcription/translation regulatory transformer protein rfah | BEN53_RS23850 | Not Available | Negative | 4680401 - 4680889 | 18371.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




