Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophanase leader peptide | BEN53_RS23065 | Not Available | Positive | 4523055 - 4523129 | 2894.56 |
| tryptophanase | BEN53_RS23070 | Not Available | Positive | 4523350 - 4524765 | 52776.4 |
| low affinity tryptophan permease tnab | BEN53_RS23075 | Not Available | Positive | 4524856 - 4526103 | 45227.3 |
| multidrug efflux mfs transporter mdtl | BEN53_RS23080 | Not Available | Positive | 4526236 - 4527411 | 41492.2 |
| hth-type transcriptional regulator yidz | BEN53_RS23085 | Not Available | Positive | 4527386 - 4528345 | 36946.0 |
| 4'-phosphopantetheinyl transferase family protein | BEN53_RS23090 | Not Available | Positive | 4528502 - 4529251 | 27648.2 |
| class i chromate reductase yief | BEN53_RS23095 | Not Available | Positive | 4529273 - 4529839 | 20376.8 |
| adenine permease adep | BEN53_RS23100 | Not Available | Negative | 4529892 - 4531229 | 46845.8 |
| 6-phosphogluconate phosphatase | BEN53_RS23105 | Not Available | Positive | 4531396 - 4532061 | 24882.0 |
| hypothetical protein | BEN53_RS23110 | Not Available | Negative | 4532198 - 4534606 | 93228.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




