Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | BEN53_RS23015 | Not Available | Negative | 4512325 - 4514739 | 90012.1 |
| dna replication/repair protein recf | BEN53_RS23020 | Not Available | Negative | 4514768 - 4515841 | 40516.4 |
| dna polymerase iii subunit beta | BEN53_RS23025 | Not Available | Negative | 4515841 - 4516941 | 40589.1 |
| chromosomal replication initiator protein dnaa | BEN53_RS23030 | Not Available | Negative | 4516946 - 4518349 | 52553.7 |
| hypothetical protein | BEN53_RS27225 | Not Available | Positive | 4518646 - 4518726 | 3130.75 |
| 50s ribosomal protein l34 | BEN53_RS23040 | Not Available | Positive | 4518956 - 4519096 | 5380.74 |
| ribonuclease p protein component | BEN53_RS23045 | Not Available | Positive | 4519113 - 4519472 | 13790.0 |
| membrane protein insertion efficiency factor yidd | BEN53_RS23050 | Not Available | Positive | 4519436 - 4519693 | 9381.61 |
| membrane protein insertase yidc | BEN53_RS23055 | Not Available | Positive | 4519696 - 4521342 | 61558.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | BEN53_RS23060 | Not Available | Positive | 4521448 - 4522812 | 49199.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




