Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | BEN53_RS22160 | Not Available | Negative | 4354701 - 4355510 | 30261.8 |
| 50s ribosomal protein l33 | BEN53_RS22165 | Not Available | Negative | 4355608 - 4355775 | 6371.94 |
| 50s ribosomal protein l28 | BEN53_RS22170 | Not Available | Negative | 4355796 - 4356032 | 9007.02 |
| radc family protein | BEN53_RS22175 | Not Available | Negative | 4356249 - 4356917 | 25259.9 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | BEN53_RS22180 | Not Available | Positive | 4357089 - 4358309 | 43426.6 |
| dutp diphosphatase | BEN53_RS22185 | Not Available | Positive | 4358287 - 4358745 | 16288.7 |
| nucleoid occlusion factor slma | BEN53_RS22190 | Not Available | Positive | 4358852 - 4359448 | 22837.7 |
| orotate phosphoribosyltransferase | BEN53_RS22195 | Not Available | Negative | 4359485 - 4360126 | 23568.3 |
| ribonuclease ph | BEN53_RS22200 | Not Available | Negative | 4360192 - 4360908 | 25313.4 |
| yicc/yloc family endoribonuclease | BEN53_RS22210 | Not Available | Positive | 4361035 - 4361898 | 33188.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




