Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-ribulose-5-phosphate 4-epimerase | BEN53_RS21850 | Not Available | Positive | 4284135 - 4284830 | 25655.6 |
| arac family transcriptional regulator | BEN53_RS21855 | Not Available | Negative | 4284862 - 4285677 | 31505.1 |
| mfs transporter | BEN53_RS21860 | Not Available | Positive | 4285903 - 4287303 | 51500.0 |
| glycoside hydrolase family 127 protein | BEN53_RS21865 | Not Available | Positive | 4287314 - 4289293 | 75427.2 |
| type ii toxin-antitoxin system hicb family antitoxin | BEN53_RS21870 | Not Available | Negative | 4289405 - 4289815 | 15243.0 |
| type ii toxin-antitoxin system hica family toxin | BEN53_RS21875 | Not Available | Negative | 4289832 - 4290017 | 6833.37 |
| type i restriction endonuclease | BEN53_RS21885 | Not Available | Positive | 4290490 - 4291569 | 40859.0 |
| aldehyde dehydrogenase aldb | BEN53_RS21890 | Not Available | Negative | 4291610 - 4293148 | 56339.5 |
| fic family protein | BEN53_RS21895 | Not Available | Negative | 4293256 - 4294551 | 48441.1 |
| l-threonine dehydrogenase | BEN53_RS21900 | Not Available | Negative | 4294681 - 4295832 | 40366.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




