Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | BEN53_RS21035 | Not Available | Negative | 4119420 - 4120736 | 48451.2 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livf | BEN53_RS21040 | Not Available | Negative | 4121134 - 4121847 | 26350.9 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livg | BEN53_RS21045 | Not Available | Negative | 4121849 - 4122616 | 28428.7 |
| branched chain amino acid abc transporter permease livm | BEN53_RS21050 | Not Available | Negative | 4122613 - 4123890 | 46286.2 |
| high-affinity branched-chain amino acid abc transporter permease livh | BEN53_RS21055 | Not Available | Negative | 4123887 - 4124813 | 32966.4 |
| high-affinity branched-chain amino acid abc transporter substrate-binding protein livk | BEN53_RS21060 | Not Available | Negative | 4124861 - 4125970 | 39449.0 |
| aspartate 1-decarboxylase autocleavage activator panm | BEN53_RS21065 | Not Available | Positive | 4126394 - 4126777 | 14573.4 |
| branched chain amino acid abc transporter substrate-binding protein livj | BEN53_RS21070 | Not Available | Negative | 4126977 - 4128080 | 39064.5 |
| rna polymerase sigma factor rpoh | BEN53_RS21080 | Not Available | Negative | 4128352 - 4129206 | 32470.6 |
| permease-like cell division protein ftsx | BEN53_RS21085 | Not Available | Negative | 4129451 - 4130509 | 38545.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




